Tool 03 — Biomarker Explorer

ROI-pair importance for autism classification.

Gradient-based analysis on Cortex reveals which connectivity edges drive ASD predictions. Each ROI-pair ranked by mean gradient magnitude across your cohort, with directionality (ASD↑ = stronger in autism, ASD↓ = weaker).

Upload connectivity data

CSV, Excel, or .npz with per-subject connectivity rows (4,950 cols). Cortex computes the gradient of its ASD-logit w.r.t. each connectivity feature, averaged across your cohort. Top-25 edges returned, mapped to Schaefer 7-network labels.

Accepted shapes (any of):
(N, 4950) — N subjects, pre-extracted features
(100, 100) — single subject connectivity matrix
(T, 100) — single subject ROI time series (T ≥ 30) — we compute connectivity for you
Showing demo data. Upload your own .npz to get real Cortex predictions.

Network-level importance

#ROI pairImportanceDirection
1
L_DMN_45R_DMN_95
DMN
0.92
ASD↑
2
L_Limbic_28R_Limbic_78
Limbic
0.87
ASD↓
3
L_DMN_42R_DMN_92
DMN
0.84
ASD↑
4
L_DMN_48L_Vis_5
DMNVis
0.78
ASD↓
5
L_Limbic_28L_DAN_20
LimbicDAN
0.76
ASD↑
6
L_VAN_25R_VAN_75
VAN
0.73
ASD↓
7
L_Vis_0L_Vis_3
Vis
0.69
ASD↑
8
L_SomMot_10R_SomMot_60
SomMot
0.66
ASD↓
9
L_Control_30R_Control_80
Control
0.63
ASD↓
10
L_Limbic_28R_Limbic_78
Limbic
0.60
ASD↑
11
L_DMN_42L_Limbic_28
DMNLimbic
0.58
ASD↓
12
L_SomMot_8L_SomMot_12
SomMot
0.54
ASD↑
13
R_VAN_72R_Vis_55
VANVis
0.51
ASD↓
14
L_DAN_20R_DAN_70
DAN
0.48
ASD↓
15
L_Limbic_28L_DMN_45
LimbicDMN
0.45
ASD↑

Biomarker detail

Edge
L_DMN_45

R_DMN_95
Networks
DMN
Gradient importance (normalized)
0.920
Direction
Hyper-connectivity in ASD

What does this mean?

In plain English

Cortex learned to tell autism-like and typical-like connectivity apart. To understand what it learned, we ask Cortex: "For each connection between brain regions, how much did this connection matter in your decision?" The answer is an importance score per ROI-pair. Higher score = Cortex paid more attention to that connection.

Of the 15 top ROI-pairs, 7 show stronger connectivity in autism (hyperconnectivity) and 8 show weaker connectivity (hypoconnectivity).

Top network: DMN

DMN contributes the most importance across all top ROI-pairs. Default Mode Network — active when you're at rest, self-reflecting, or mind-wandering. Central to self-referential thinking.

This is consistent with a large body of autism neuroimaging literature, which has repeatedly identified atypical connectivity in DMN, social-attention networks (VAN), and frontoparietal control systems.

Your top biomarker edge

L_DMN_45R_DMN_95 is Cortex's most important single connection (importance = 0.92).

It involves the DMN network. Cortex expects this connection to be stronger in autistic brains than typical — a finding consistent with reported DMN hyperconnectivity patterns.

What to do with these results

Treat these as targets for follow-up, not discoveries. Good next steps:

(1) Cross-check literature — do the top edges match published autism connectivity findings? If yes, you've corroborated your dataset and Cortex's learning. (2) Targeted testing — design a focused imaging study on the top 3-5 edges with a larger, stratified cohort. (3) Mechanism — what could cause this specific edge to differ? Tract-tracing, neurotransmitter mapping, genetics can answer that downstream.

Important caveats

Gradient-based importance tells you what Cortex used to classify, not necessarily what causes autism. A feature can be highly predictive because it's an artifact (motion, age, sex confound) rather than a biological signal. Always check your results against known confounds, and prefer edges that appear robustly across multiple cohorts.

Interpretation notes

Gradient-based importance: measures how much each input feature contributes to Cortex's classification. Averaged across your uploaded cohort, this yields stable ROI-pair rankings.

Direction (ASD↑/↓) is the sign of the mean gradient w.r.t. the ASD class. ASD↑ means Cortex expects stronger connectivity in autism; ASD↓ means weaker.

These are hypotheses, not facts. Cortex's biomarkers are candidates for follow-up in targeted imaging studies. Results consistent with published literature on DMN hyperconnectivity, fronto-parietal hypoconnectivity, and social-network weakening in ASD validate the approach, but your specific cohort may differ.

ROI naming uses Schaefer 100-parcel 7-network ordering. First 50 indices = left hemisphere, next 50 = right. Networks: Vis, SomMot, DAN, VAN, Limbic, Control, DMN.